Expunging Microglial Lipid Droplets Boosts Phagocytosis
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In Alzheimer’s disease, microglia pack on fat, which impairs phagocytosis. Now, scientists led by Christiane Ruedl of Nanyang Technological University, Singapore, report that blocking lipid buildup in these cells restores their capacity to engulf Aβ, leading to fewer plaques in the brains of APP knock-in mice. Their paper ran in the February 5 Science Advances.
- Microglia overloaded with lipids choke on Aβ in APP knock-in mice.
- Depleting the fat-storage-associated protein FIT2 reduced lipid droplet formation.
- Sans FIT2, microglia rein in plaques.
“This adds to the growing body of work, from mouse and fly models, implicating lipid metabolism in neurodegeneration, particularly AD,” Amita Sehgal, Perelman School of Medicine, University of Pennsylvania, told Alzforum. “The manuscript also suggests a possible therapeutic intervention to reduce lipid load in microglia.”
Previously, Tony Wyss-Coray and colleagues at Stanford University, Palo Alto, California, had identified lipid-droplet–accumulating microglia lurking in the hippocampi of aging mice. These fat-stuffed cells spelled trouble, fanning inflammation and reactive oxygen species while struggling to clear debris (Marschallinger et al., 2020; Aug 2019 news). Since then, two studies—one from the same group and one led by Gaurav Chopra, Purdue University, West Lafayette, Indiana—showed that exposure to Aβ fibrils triggered this lipid droplet buildup, as it summoned microglia to cluster near plaques (Haney et al., 2024; Prakash et al., 2023; Sep 2023 news). Critically, the lipid impaired Aβ clearance from the brain through phagocytosis.
Building on this research, Ruedl and colleagues ask which factors influence lipid buildup, and they identify the types of fats involved. First author Xiaoting Wu and colleagues cultured microglia from wild-type and APP-NL-G-F knock-in mice. As previously reported, the number of fat-laden microglia grew with age in wild-type mice, from 5 percent at 2 months to 35 percent at 6 months. This was even more pronounced in APP-knock-in mice, in which half of all isolated microglia carried fatty deposits by 6 months. Throw in a high-fat diet, and lipid-stuffed microglia grew to 60 percent.
Weighing Heavy. Microglia cultured from 2-month-old APP N-L-GF mice looked normal (left), but those cultured from 6-month-old animals (middle) accumulated lipid droplets (green). A high-fat diet made this worse (right). [Courtesy of Wu et al., Sci. Advances, 2025.]
What’s in these droplets? Lipid profiling revealed elevated levels of triglycerides and cholesterol esters—the main fats that make up lipid droplets (Fujimoto and Parton, 2011). Kimberley Bruce, University of Colorado in Aurora, noted a dearth of the arachidonic acid, a precursor to prostaglandins and leukotrienes, highlighting potential deficits in the inflammatory response (comment below).
High-Profile Lipids. Microglia from 6-month-old APP KI mice accumulate (red) 64 triglycerides and five cholesterol esters, among other lipids. Sphinganine metabolites and several free fatty acids tanked (blue). [Courtesy of Wu et al., Sci. Advances, 2025.]
Which genes are behind this shift? Wu isolated microglia from 6-month-old wild-type and APP knock-in mice and ran single-cell RNA sequencing. This identified 10 distinct microglial clusters and three clusters of border-associated macrophages. The latter reside in perivascular spaces in the brain and have been linked to cerebral amyloid angiopathy (Apr 2023 conference news; Aug 2024 conference news).
Reactive microglia—including Nlrp3-positive inflammasome-related, TNF-hi, and CD11c-positive “activated response” microglia (ARM)—were more prevalent in the knock-ins, the CD11c+ cluster being the most abundant. This cluster was chock-full of lipid metabolism genes typically associated with foam cells—lipid-rich macrophages that accumulate near atherosclerotic plaques in cardiovascular disease. These included some familiar genes, such as ApoE, Abca1, and TREM2 (image below).
Foaming at the Cell. Microglia and border-associated macrophage clusters boost expression of some genes (right) associated with foam cells. Cluster 1, activated response microglia—prevalent in APP-KIs—highly expressed these genes. [Courtesy of Wu et al., Sci. Advances, 2025.]
Wu and colleagues confirmed that cultured-microglia-carrying lipid droplets struggled with phagocytosis, poorly engulfing fluorescently labeled inactivated E. Coli or Aβ. What if microglia were free of excessive lipids? To find out, researchers targeted FIT2, a protein embedded in the endoplasmic reticulum that helps lipid droplets form and bud.
Because all cells express FIT2 and whole-body knockout is lethal (Goh et al., 2015), the authors created a conditional knockout. When APP-N-L-GF mice were 2 months old, Wu used a tamoxifen-inducible transgene to selectively deplete Fit2 in CX3CR1-positive brain macrophages, including microglia. By 6 months, lipid staining revealed that microglia in these mice had 30 percent smaller lipid droplet area than control microglia. The FIT2-deficient microglia were not entirely devoid of droplets, in keeping with the protein primarily unleashing triglyceride-laden droplets. Other lipids, such as sterol esters, may still contribute.
Would absence of FIT2 make microglia function more smoothly? The moment of truth came when Wu tested phagocytosis of FIT2-depleted microglia. They slurped more E. coli particles and Aβ oligomers than FIT2-positive cells. Most compellingly, FIT2 depletion in the mouse brain enhanced Aβ clearance. Immunofluorescence staining revealed significantly fewer Aβ plaques in the cortex and hippocampus of FIT2-deficient mice (image below).
“These exciting proof-of-concept data support a growing body of literature highlighting microglial lipid metabolism as a rational, and clinically relevant, target to improve AD pathology,” Bruce told Alzforum.
Back to Work. Six-month-old APP-NL-G-F mice accumulate amyloid plaques (red) in the cortex and hippocampus (left). Knocking out Fit2 in microglia reduces lipid droplet and plaque burden (right). [Courtesy of Wu et al., Sci. Advances, 2025.]
Still, whether targeting FIT2 improves memory in the mice is unclear, wrote Laura Piccio of the University of Sydney (comment below). Wu noted that APP knock-in mice have only modest memory problems, making it difficult to assess any impact of microglial lipid depletion. Nevertheless, the authors see clinical potential, writing, “Reducing microglial LD load via FIT2 depletion or other pharmacological interventions is a feasible therapeutic strategy.” Piccio was more cautious. “The study does not explore the broader effects of FIT2 depletion in vivo,” she wrote. “Interfering with its function could have systemic and long-term effects.”—George Heaton
George Heaton is a freelance writer in Durham, North Carolina.
References
News Citations
- Newly Identified Microglia Contain Lipid Droplets, Harm Brain
- Lipid-Laden, Sluggish Microglia? Blame Aβ.
- Macrophages Blamed for Vascular Trouble in ApoE4 Carriers
- Implicated in ARIA: Perivascular Macrophages and Microglia
Research Models Citations
Paper Citations
- Marschallinger J, Iram T, Zardeneta M, Lee SE, Lehallier B, Haney MS, Pluvinage JV, Mathur V, Hahn O, Morgens DW, Kim J, Tevini J, Felder TK, Wolinski H, Bertozzi CR, Bassik MC, Aigner L, Wyss-Coray T. Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain. Nat Neurosci. 2020 Feb;23(2):194-208. Epub 2020 Jan 20 PubMed. Correction.
- Haney MS, Pálovics R, Munson CN, Long C, Johansson PK, Yip O, Dong W, Rawat E, West E, Schlachetzki JC, Tsai A, Guldner IH, Lamichhane BS, Smith A, Schaum N, Calcuttawala K, Shin A, Wang YH, Wang C, Koutsodendris N, Serrano GE, Beach TG, Reiman EM, Glass CK, Abu-Remaileh M, Enejder A, Huang Y, Wyss-Coray T. APOE4/4 is linked to damaging lipid droplets in Alzheimer's disease microglia. Nature. 2024 Apr;628(8006):154-161. Epub 2024 Mar 13 PubMed.
- Prakash P, Manchanda P, Paouri E, Bisht K, Sharma K, Wijewardhane PR, Randolph CE, Clark MG, Fine J, Thayer EA, Crockett A, Gasmi N, Stanko S, Prayson RA, Zhang C, Davalos D, Chopra G. Amyloid β Induces Lipid Droplet-Mediated Microglial Dysfunction in Alzheimer's Disease. bioRxiv. 2023 Jun 6; PubMed.
- Fujimoto T, Parton RG. Not just fat: the structure and function of the lipid droplet. Cold Spring Harb Perspect Biol. 2011 Mar 1;3(3) PubMed.
- Goh VJ, Tan JS, Tan BC, Seow C, Ong WY, Lim YC, Sun L, Ghosh S, Silver DL. Postnatal Deletion of Fat Storage-inducing Transmembrane Protein 2 (FIT2/FITM2) Causes Lethal Enteropathy. J Biol Chem. 2015 Oct 16;290(42):25686-99. Epub 2015 Aug 24 PubMed.
Further Reading
Papers
- Marschallinger J, Iram T, Zardeneta M, Lee SE, Lehallier B, Haney MS, Pluvinage JV, Mathur V, Hahn O, Morgens DW, Kim J, Tevini J, Felder TK, Wolinski H, Bertozzi CR, Bassik MC, Aigner L, Wyss-Coray T. Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain. Nat Neurosci. 2020 Feb;23(2):194-208. Epub 2020 Jan 20 PubMed. Correction.
- Haney MS, Pálovics R, Munson CN, Long C, Johansson PK, Yip O, Dong W, Rawat E, West E, Schlachetzki JC, Tsai A, Guldner IH, Lamichhane BS, Smith A, Schaum N, Calcuttawala K, Shin A, Wang YH, Wang C, Koutsodendris N, Serrano GE, Beach TG, Reiman EM, Glass CK, Abu-Remaileh M, Enejder A, Huang Y, Wyss-Coray T. APOE4/4 is linked to damaging lipid droplets in Alzheimer's disease microglia. Nature. 2024 Apr;628(8006):154-161. Epub 2024 Mar 13 PubMed.
- Prakash P, Manchanda P, Paouri E, Bisht K, Sharma K, Wijewardhane PR, Randolph CE, Clark MG, Fine J, Thayer EA, Crockett A, Gasmi N, Stanko S, Prayson RA, Zhang C, Davalos D, Chopra G. Amyloid β Induces Lipid Droplet-Mediated Microglial Dysfunction in Alzheimer's Disease. bioRxiv. 2023 Jun 6; PubMed.
- Fujimoto T, Parton RG. Not just fat: the structure and function of the lipid droplet. Cold Spring Harb Perspect Biol. 2011 Mar 1;3(3) PubMed.
- Kadereit B, Kumar P, Wang WJ, Miranda D, Snapp EL, Severina N, Torregroza I, Evans T, Silver DL. Evolutionarily conserved gene family important for fat storage. Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):94-9. Epub 2007 Dec 26 PubMed.
Primary Papers
- Wu X, Miller JA, Lee BT, Wang Y, Ruedl C. Reducing microglial lipid load enhances β amyloid phagocytosis in an Alzheimer's disease mouse model. Sci Adv. 2025 Feb 7;11(6):eadq6038. Epub 2025 Feb 5 PubMed.
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Stanford University Medical School
Stanford University
Reducing microglial lipid load enhances Aβ phagocytosis in an Alzheimer’s disease mouse model
Wu and co-authors investigate the role of lipid-droplet-accumulating microglia (LDAM) and border-associated macrophages (BAMs) in an APP-KI model, which harbors a humanized Aβ sequence containing the Swedish, Beyreuther/Iberian, and Arctic mutations. The experiments were conducted in 6-month-old mice, an age at which memory deficits are observed in this model (Saito et al., 2014). By integrating multi-omics approaches, including transcriptomic and lipidomic profiling, the authors document how LD formation influences microglial function. Notably, genetic deletion of FIT2 which is a known regulator of lipid droplet biogenesis, restored microglial phagocytosis and enhanced Aβ clearance, suggesting a potential therapeutic avenue.
Targeting FIT2 effectively reduced LD formation, appeared to restore microglial phagocytosis, and improved plaque clearance in APP-KI mice. Interestingly, CD11c+ microglia in FIT2-deficient APP-KI mice exhibited a downregulation of disease-associated microglial (DAM) genes, including Trem2, Apoe, and Cd9, which may be a consequence of reduced amyloid burden. However, these microglia retained high expression of MHC II genes, particularly Cd74. Notably, Cd74 and Axl were previously reported to show higher expression in LD-low microglia compared to LD-high microglia (Marschallinger et al., 2020).
Furthermore, ACSL1, an enzyme that catalyzes the conversion of free fatty acids (FFAs) into Acyl-CoAs, plays a crucial role in lipid droplet biogenesis and has been implicated in microglial dysfunction in AD (Haney et al., 2024). The elevated FFA levels observed in FIT2-deficient microglia warrant further investigation, particularly in the context of lipid metabolism and microglial homeostasis.
From a therapeutic standpoint, targeting FIT2 would likely present significant challenges due to its higher expression in neurons and astrocytes than in microglia within the brain. Notably, homozygous FITM2 mutations have been associated with deafness-dystonia syndrome, motor regression, ichthyosis, and sensory neuropathy, raising concerns about potential adverse effects of systemic FIT2 inhibition (Zazo Seco et al., 2017). Another critical question is whether peripheral immune cells exhibit distinct FIT2-regulated pathways and whether FIT2 modulation could be CX3CR1-specific. Addressing these questions will be essential for the development of targeted therapeutic strategies that minimize unintended consequences while effectively modulating FIT2.
Another key question emerging from this and other studies on LDs in mice is their relevance to human brain aging and AD, as well as the role different ApoE isoforms play. Previous research from our lab, building on Alzheimer’s original observations of LDs in AD, suggests that APOE4 carriers may be more prone to LD formation and more susceptible to their toxic effects. However, further studies are needed to determine in which cell types LDs accumulate in humans, the molecular processes driving LD formation, and how these deposits interfere with cellular functions.
Overall, this study elegantly highlights the importance of microglial lipid droplets in amyloid pathology and provides novel insights into their role in microglial function, lipid metabolism, and disease progression.
References:
Saito T, Matsuba Y, Mihira N, Takano J, Nilsson P, Itohara S, Iwata N, Saido TC. Single App knock-in mouse models of Alzheimer's disease. Nat Neurosci. 2014 May;17(5):661-3. Epub 2014 Apr 13 PubMed.
Marschallinger J, Iram T, Zardeneta M, Lee SE, Lehallier B, Haney MS, Pluvinage JV, Mathur V, Hahn O, Morgens DW, Kim J, Tevini J, Felder TK, Wolinski H, Bertozzi CR, Bassik MC, Aigner L, Wyss-Coray T. Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain. Nat Neurosci. 2020 Feb;23(2):194-208. Epub 2020 Jan 20 PubMed. Correction.
Haney MS, Pálovics R, Munson CN, Long C, Johansson PK, Yip O, Dong W, Rawat E, West E, Schlachetzki JC, Tsai A, Guldner IH, Lamichhane BS, Smith A, Schaum N, Calcuttawala K, Shin A, Wang YH, Wang C, Koutsodendris N, Serrano GE, Beach TG, Reiman EM, Glass CK, Abu-Remaileh M, Enejder A, Huang Y, Wyss-Coray T. APOE4/4 is linked to damaging lipid droplets in Alzheimer's disease microglia. Nature. 2024 Apr;628(8006):154-161. Epub 2024 Mar 13 PubMed.
Zazo Seco C, Castells-Nobau A, Joo SH, Schraders M, Foo JN, van der Voet M, Velan SS, Nijhof B, Oostrik J, de Vrieze E, Katana R, Mansoor A, Huynen M, Szklarczyk R, Oti M, Tranebjærg L, van Wijk E, Scheffer-de Gooyert JM, Siddique S, Baets J, de Jonghe P, Kazmi SA, Sadananthan SA, van de Warrenburg BP, Khor CC, Göpfert MC, Qamar R, Schenck A, Kremer H, Siddiqi S. A homozygous FITM2 mutation causes a deafness-dystonia syndrome with motor regression and signs of ichthyosis and sensory neuropathy. Dis Model Mech. 2017 Feb 1;10(2):105-118. Epub 2016 Dec 15 PubMed.
University of Colorado Anschutz Medical Campus
Although the sequestering of lipids within intracellular lipid droplets protects against lipid oxidation, excess lipid droplet accumulation is associated with aging and disease. In AD, microglia accumulate excess lipid droplets, which leads to reduced functionality, such as phagocytosis, promoting AD neuropathogenesis. While many research groups, including our own, have been interested in understanding the mechanisms leading to lipid droplet accumulation, in this study, Wu et al. focus on strategies that reduce LDs to increase microglial phagocytosis and prevent AD pathology.
The authors use cell sorting to confirm that lipid-droplet-containing microglia increase with aging and disease, in this case, a murine model of amyloid accumulation (APP-KI). In further support, untargeted lipidomics showed that microglia isolated from APP-KI mice contained more neutral lipids typically associated with LDs (e.g., triglycerides and cholesterol esters). I also found it interesting that the very-long-chain polyunsaturated fatty acid and eicosanoid precursor arachidonic acid was depleted in microglia from the APP-KI mice, highlighting potential deficits in the inflammatory response. It would also be interesting to probe the saturation index of lipids within the microglia, especially given recent papers highlighting increased unsaturated lipids in (pathology-associated) lipid droplets.
To further ascertain the phenotype of microglia in response to increased amyloid load, the authors use single-cell transcriptomics, identifying lipid-accumulating disease-associated microglia (DAM)-like signatures (e.g., expressing ApoE, LPL, Trem2, and Cst7) that have also been observed in other AD models (e.g., 5xFAD). Going forward, methodological advances permitting, performing lipidomic and transcriptomic analysis on the same cells will advance our mechanistic understanding of microglial lipid metabolism and lipid droplet formation.
Chasing a therapeutic intervention, Wu and colleagues genetically ablate FIT2 (CX3CR1; FIT2flox), a protein that binds to triglycerides and diacylglycerols in the endoplasmic reticulum to increase lipid droplet formation. Microglia-specific FIT2 depletion in APP-KI mice resulted in reduced microglial lipid droplet accumulation, triglyceride composition, expression of DAM-like genes (e.g., Plin2, ApoE, Trem2, and Cts7), and amyloid load. FIT2 depletion also results in increased microglial phagocytosis ex vivo, and in vitro, supporting the idea that reducing lipid droplet accumulation in microglia could preserve functionality and rescue AD-like pathology.
These exciting proof-of-concept data support a growing body of literature highlighting microglial lipid metabolism as a rational, and clinically relevant, target to improve AD pathology. However, it is important to reiterate that at baseline lipid droplets serve to protect the cell. Therefore, selectively inhibiting lipid droplet formation in subsets of microglia and at specific disease stages will be an attractive strategy going forward.
Washington University in St. Louis
This study investigates the role of the protein FIT2, a key protein in lipid droplet biogenesis, in LD accumulation within microglia and BAMs in an AD mouse model. They show that LDs accumulate with age and AD progression in the two cell types in the CNS and that this is exacerbated by a high-fat diet. Other key findings include that FIT2 deficiency reduces LD formation in microglia and BAMs, leading to changes in their lipid metabolism and gene-expression profiles. Furthermore, FIT2 depletion enhances microglial phagocytosis, increasing the uptake of E. coli bioparticles and Aβ oligomers in vitro, as well as reducing Aβ accumulation in the brain tissue.
This study is novel and has the following strengths:
Limitations include:
In conclusion, this study provides important insights into the metabolic dysfunction of microglia in AD, as a result of altered lipid-homeostasis. Furthermore, it identifies FIT2 as a promising target for intervention. However, further in vivo and human studies are needed to confirm its therapeutic potential and to understand long-term effects of interfering with its function in the brain.
CUNY Advanced Science Research Center
This study contributes to a growing body of research on the role of microglial lipid metabolism in Alzheimer’s disease. Important studies from the labs of Tony Wyss-Coray, Li-Huei Tsai, Mathew Blurton-Jones, Gaurav Chopra, Erik Musiek, and many others showed that amyloidosis induces a shift in microglial lipid metabolism and lipidomic profile, as well as an increase in lipid-droplet-accumulating microglia near sites of pathology. A common theme in these studies is that these microglia have reduced phagocytic capabilities and a neurotoxic effect.
Christiane Ruedl’s research group shows that this phenomenon is not limited to microglia but also seen in brain macrophages of the meninges. This study goes another step further, showing us that reducing LDs in microglia/macrophages via genetic depletion of FIT2 not only restores their phagocytic activity but also reduces amyloid burden in APP knock-in.
University of Pennsylvania
University of Pennsylvania
In this study Wu et al. make an important contribution to a trajectory of recent papers on the damaging role of lipid-droplet-accumulating microglia (LDAM). In 2020, transcriptomic and functional studies of LDAM in the aged mouse brain established this microglia subset as a dysfunctional and proinflammatory state (Marschallinger et al., 2020). This was followed by studies showing a similar lipid-accumulating state in human microglia in the AD context (Claes et al., 2021; Victor et al., 2022; Sun et al., 2023; Haney et al., 2023). This study establishes a functional assessment of LDAM in AD models in vivo.
Here, Wu et al. thoroughly characterize and functionally test lipid droplet (LD) accumulation in microglia and border-associated macrophages (BAMs). They do this by comparing 2-month and 6-month APP-KI mice to age-matched WT mice. Specifically, they isolate lipid-accumulating microglia and BAMs by FACS for single-cell and lipidomic characterization and observe more LD in the microglia and BAMs of older mice, which was further exacerbated in the AD model with a majority of LDAMs surrounding Aβ plaques in these animals. Additionally, they test the effects of a high-fat diet which led to an even greater increase in LD accumulation with age, especially in the APP-KI mice. They reduce LDs in a macrophage-specific manner by crossing the Cx3cr1CreERT2 mouse strain with the Fit2fl/fl mouse strain into the APP-KI background. This lowering of LDs led to a functional rescue in microglial phagocytic and efferocytic activity as well as decreased Aβ plaque load in vivo.
This study is an important leap forward on the topic of LDs in AD for several reasons:
This study raises the following:
Overall, this is a very exciting study on this newly identified microglial state and the pathogenic role these cells play in AD.
References:
Claes C, Danhash EP, Hasselmann J, Chadarevian JP, Shabestari SK, England WE, Lim TE, Hidalgo JL, Spitale RC, Davtyan H, Blurton-Jones M. Plaque-associated human microglia accumulate lipid droplets in a chimeric model of Alzheimer's disease. Mol Neurodegener. 2021 Jul 23;16(1):50. PubMed.
Gannon OJ, Robison LS, Salinero AE, Abi-Ghanem C, Mansour FM, Kelly RD, Tyagi A, Brawley RR, Ogg JD, Zuloaga KL. High-fat diet exacerbates cognitive decline in mouse models of Alzheimer's disease and mixed dementia in a sex-dependent manner. J Neuroinflammation. 2022 May 14;19(1):110. PubMed.
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Liang Z, Gong X, Ye R, Zhao Y, Yu J, Zhao Y, Bao J. Long-Term High-Fat Diet Consumption Induces Cognitive Decline Accompanied by Tau Hyper-Phosphorylation and Microglial Activation in Aging. Nutrients. 2023 Jan 3;15(1) PubMed.
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