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New Ubiquitinated Inclusion Body Protein Identified
8 October 2006. Ubiquitin-positive protein inclusions are a hallmark of frontotemporal dementias and other neurodegenerative diseases. In some cases, the aggregating proteins are known, such as the tau protein in frontotemporal dementia with parkinsonism linked to chromosome 17 (FTDP-17) and Alzheimer disease, or α-synuclein in Parkinson disease. But in many diseases, the makeup of the clumps of protein dotting the nucleus, cytoplasm or neurites is a mystery.

In a paper out today in Science, Virginia Lee and coworkers at University of Pennsylvania School of Medicine in Philadelphia report a positive ID of a new offender, responsible for inclusions in two different neurodegenerative diseases. The protein, TDP-43, is cleaved, hyperphosphorylated, and ubiquitinated in inclusion bodies in both frontotemporal lobar degeneration with ubiquitin-positive inclusions (FTLD-U) and amyotrophic lateral sclerosis (ALS). The results suggest that these two diseases may have a common pathological basis with TDP-43 at its root.

To identify their suspect, the first authors Manuela Neumann, Deepak Sampathu, and Linda Kwong made monoclonal antibodies to inclusion proteins. With the antibodies, they defined three subtypes of FTLD-U, each of which showed a disease-specific protein which reacted to a different monoclonal antibody after gel electrophoresis. By mass spectrometry analysis, they identified the protein recognized by two of the monoclonal antibodies as the TDP-43 protein. Subsequently, they showed that a polyclonal antibody raised against TDP-43 reacted with the inclusions in all three types of FTLD-U, and also inclusions in brain tissue from two different kindreds of FTDP-17U with progranulin mutations (see ARF related news story). In contrast, TDP-43-containing inclusions were not detected in either control or Alzheimer disease brains.

The TDP-43 protein in inclusions was both phosphorylated and ubiquitinated. In disease tissues, extracted protein appeared as fragments, with some full-length and high-molecular-weight aggregates as well. A product of the TARDP gene on human chromosome 1, TDP-43 is a highly conserved, ubiquitously expressed nuclear protein. It contains RNA-recognition motifs and may function in splicing. Pathological accumulation is accompanied by a movement of the protein into the cytoplasm, which may interfere with its nuclear functions.

Clinical and pathological evidence points to ALS being a different manifestation of the same neurodegenerative process as FTLD-U, and this idea was strengthened by the investigators’ finding that inclusions in ALS also contained TDP-43. All inclusions in motor neurons were stained with the TDP-43 antibody, as were formations in the hippocampus and cortex, from both sporadic and familial ALS cases.

“The identification of TDP-43 as the major component of UBIs [ubiquitin positive inclusions] specific to sporadic and familial FTLD-U as well as sporadic ALS resolves a long-standing enigma concerning the nature of the ubiquitinated disease proteins in these disorders. Thus, these diseases may represent a spectrum of disorders that share similar pathological mechanisms, culminating in the progressive degeneration of different selectively vulnerable neurons.” The identification of TDP-43 should lead to new insights into these diseases.—Pat McCaffrey.

Reference:
Neumann M, Sampathu DM, Kwong LK, Truax AC, Micsenyi MC, Chou TT, Bruce J, Schuck T, Grossman M, Clark CM, McCluskey LF, Miller BL, Masliah E, Mackenzie IR, Feldman H, Feiden W, Kretzschmar HA, Trojanowski JQ, Lee VM. Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis. Science. 2006 October 6; 314:130-133. Abstract

 
Comments on News and Primary Papers
  Primary Papers: Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.

Comment by:  Antony Horton
Submitted 9 October 2006  |  Permalink Posted 11 October 2006
  I recommend this paper

  Comment by:  Julene K. Johnson
Submitted 12 October 2006  |  Permalink Posted 12 October 2006

From a clinical perspective, the identification of TDP-43 protein represents a major breakthrough in our understanding of both frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). The TDP-43 is the mystery protein that is associated with the ubiquitin-positive inclusions that are commonly found in many patients with FTLD and in most, if not all, patients with ALS.

This finding is particularly important because several recent papers suggest that patients who have FTLD with ubiquitin inclusions at autopsy (FTLD-U) account for approximately 50 percent of all autopsy-confirmed FTLD cases (1-3). The remaining majority of FTLD cases are associated with the tau protein, but other neuropathological diagnoses exist. The finding that possibly one-half of all FTLD patients may have ubiquitin-positive neuropathology means that any breakthroughs in the biology of this protein could potentially translate into helping a large proportion of FTLD patients.

In addition, the finding that the TDP-43 protein is also found in patients with ALS further supports...  Read more


  Comment by:  David M.A. Mann
Submitted 12 October 2006  |  Permalink Posted 12 October 2006

In this paper, Drs. Lee and Trojanowski and colleagues have at long last identified the mystery protein hiding within the ubiquitinated inclusions that characterize certain histological forms of frontotemporal lobar degeneration (FTLD), termed FTLD-U. This task has challenged neuroscientists for well over a decade, with all prior attempts at identification using immunohistochemical or biochemical methods proving fruitless. The culprit protein is a TAR DNA-binding protein, known as TDP-43. This protein is present within all the ubiquitinated structures in FTLD-U, viz., the neuronal cytoplasmic inclusions, the neuronal intranuclear inclusions, and the neuritic changes, though whether this is the sole component of these structures (other than ubiquitin) remains uncertain. Some previous studies reported the presence of p62 protein within neuronal cytoplasmic inclusions, but such findings have been inconsistent. Moreover, Lee and Trojanowski have shown that the ubiquitinated neuronal cytoplasmic inclusions seen within spinal and cranial nerve nuclear motor neurons in motor neuron...  Read more

  Primary Papers: Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.

Comment by:  Andre Delacourte
Submitted 16 October 2006  |  Permalink Posted 17 October 2006
  I recommend this paper

  Primary Papers: Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.

Comment by:  Andrew Singleton, ARF Advisor
Submitted 16 October 2006  |  Permalink Posted 17 October 2006
  I recommend this paper

  Comment by:  Tetsuaki Arai
Submitted 14 October 2006  |  Permalink Posted 18 October 2006
  I recommend the Primary Papers

Neumann, Sampathu, Kwong, and colleagues have resolved a long-standing issue in the research field of frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). These authors have identified TDP-43 as a major component of ubiquitin-positive inclusions that characterize these disorders. They first extracted a fraction from the patients' brains using monoclonal antibodies and then analyzed it by mass spectrometry. Their findings have greatly facilitated the understanding of the molecular pathogenesis of FTLD and ALS.

Independently, we have also found TDP-43 as a component of the inclusions in FTLD [1]. Following electrophoresis of the sarkosyl-insoluble brain extracts from FTLD, Alzheimer disease (AD) and dementia with Lewy bodies (DLB), we have done exhaustive analyses by mass spectrometry. Following identification of each molecule that is more abundant in FTLD than AD/DLB, we have studied FTLD brain samples immunochemically and immunohistochemically. The antibodies to TDP-43 have immuno-stained neuronal inclusions and dystrophic neurites in the...  Read more


  Primary Papers: Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.

Comment by:  Jason Eriksen
Submitted 9 October 2007  |  Permalink Posted 11 October 2007
  I recommend this paper
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