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ABAD, aka ERAB: Mitochondrial Miscreant Returns
16 April 2004. The Aβ-binding alcohol dehydrogenase (ABAD) forms a complex with Aβ in mitochondria, promoting leakage of free radicals, mitochondrial dysfunction, and cell death, according to a combined structure/function and animal study to be published in Science today. The paper proposes a molecular mechanism for how Aβ kills neurons; the current absence of a consensus mechanism for Aβ toxicity is one of the most prominent gaps of the amyloid hypothesis.

At the tail end of the last millennium, a spotlight shone briefly on an enzyme that appeared to bind Aβ in the endoplasmic reticulum. Initially dubbed "ER-associated binding protein" (ERAB), it was also found to be elevated in some neurons in AD brain (see Yan (abstr. 881) in Alzforum meeting report.) But then the true site of the enzyme's tryst with Aβ turned out to be mitochondria, and it was renamed ABAD (see, e.g., He et al., 2002). It also carries the moniker 7β-hydroxysteroid dehydrogenase (HSD), type 10 (or just HSD-10), and is known to modulate intracellular levels of sex steroids in non-neural cells (see, e.g., Ivell et al., 2003; Wen et al., 2002).


In this figure the Aβ-bound human ABAD complex is shown in pink. For comparison, it is superimposed on the rat ABAD in complex with NAD (blue). The L[D] loop of 3∀-hydroxysteroid dehydrogenase (3∀-HSD) is shown in yellow, and NAD is shown as a stick model in the center. Also shown is the proposed Aβ-binding loop. (Image copyright Science)

Shirley ShiDu Yan of Columbia University in New York City and colleagues have been pursuing this molecule since before its name change and found, among other things, that ABAD might mediate the cellular stress induced by Aβ (Yan et al., 2001). In their most recent study—a collaboration with biochemist Hao Wu's team at Weil Medical College of Cornell University in New York City, as well as with researchers elsewhere—Yan's team explores how and where this potentially destructive coupling takes place.

The researchers first established that there is a significant presence of the ABAD-Aβ complex in human AD brain, as opposed to almost none in normal age-matched controls. The researchers also fingered the complex in mitochondria of 12-month-old mice transgenic for human mutant APP or for both mAPP and ABAD. A closer look with confocal and electron microscopy showed that the ABAD/Aβ complex was taking up residence in the mitochondria of AD-derived cortical brain tissue, as well as in the transgenic mAPP/ABAD mice.

In a further series of experiments, the researchers probed the structural relationships of Aβ and ABAD. They solved the crystal structure of human ABAD in the presence of excess nicotinamide adenine dinucleotide (NAD) and Aβ. (NAD is a cofactor in the enzyme reaction mediated by ABAD.) They determined that Aβ binds to ABAD in such a way as to exclude NAD binding. They also saw that the critical segment of ABAD for recognition of Aβ appears to be the L[D] loop. Armed with this knowledge, the researchers were able to design a selective inhibitor of the Aβ-ABAD interaction, termed the decoy peptide, or ABAD-DP. It consists simply of the short peptide segment that includes the L[D] loop.


Crystal packing of many separate ABAD molecules, with the ordered ends of the L[D] loops (dotted pink lines) pointing into interconnected solvent channels. Each ABAD molecule is shown in a different color. (Image copyright Science)

Using this inhibitor, the researchers demonstrate in cultured neurons that Aβ-induced oxidative stress is dependent upon ABAD. The ABAD-DP prevents the production of reactive oxygen species, DNA fragmentation, and cell death. And finally, what AD tour de force would be complete without a water maze experiment? The researchers tested transgenic mAPP/ABAD in the radial arm water maze and report that their spatial and temporal memory was severely impaired.

"Taken together, these studies establish that Aβ may exert an important pathogenic role in the mitochondrial compartment through an interaction with ABAD, and that inhibition of ABAD-Aβ interaction may provide a new treatment strategy against AD," conclude the authors. The same issue of Science contains a separate study that also implicates the mitochondria in neurodegeneration and cell stress, this time through the new familial parkinsonism gene Pink1 (see ARF related news story).—Hakon Heimer.

Reference:
Lustbader JW, Cirilli M, Lin C, Xu HW, Takuma K, Wang N, Caspersen C, Chen X, Pollak S, Chaney M, Trinchese F, Liu S, Gunn-Moore F, LueL-F, Walker DG, Kuppusamy P, Zewier ZL, Arancio O, Stern D, Yan SD, Wu H. ABAD directly links Aβ to mitochondrial toxicity in Alzheimer's disease. Science. 2004 Apr 16;304:448-52. Abstract

 
Comments on News and Primary Papers
  Comment by:  Michael Lin
Submitted 19 April 2004  |  Permalink Posted 19 April 2004

In this article, Lustbader and colleagues investigate what happens when Aβ interacts with ABAD (Aβ-binding alcohol dehydrogenase), the only protein found to interact with Aβ in a yeast two-hybrid screen [1]. In the current work, the authors showed that ABAD and Aβ colocalized to mitochondria by electron microscopy, and could be coimmunoprecipitated from a mitochondrial preparation. Aβ caused the cofactor NAD+ to be excluded from the crystal structure of ABAD, likely explaining the previously observed [2] inhibition of enzymatic activity by Aβ. ABAD levels were increased in pathologically affected areas of AD brain. This is potentially deleterious, because the presence of ABAD exacerbated the cytotoxicity of exogenous Aβ or of expressing a doubly mutated APP, resulting in increased free radical production, cytochrome c release, and DNA fragmentation. Moreover, mice coexpressing ABAD and mutant APP exhibited learning deficits. An ABAD “decoy peptide,” elegantly designed based on the crystal structure, attenuated Aβ-induced cytotoxicity, presumably by preventing the interaction of...  Read more

  Comment by:  Vincent Marchesi, ARF Advisor
Submitted 19 April 2004  |  Permalink Posted 19 April 2004

This is an interesting but still incomplete story. This work dates back several years, when the authors found an unexpected ability of the Aβ peptide to bind to the enzyme alcohol dehydrogenase (ADH). It appears that the binding is relatively specific when compared with other peptides, although I am surprised that these peptides don't bind to other proteins non-specifically. The authors had a great opportunity to study the interaction between Aβ and the so-called ABAD protein when they apparently cocrystallized the two. Unfortunately they could not see the Aβ peptide in the complex, so it is impossible to say where Aβ actually binds, or why it blocks the ability of NAD to bind to ABAD.

The paper shows that Aβ and ABAD localize in, around, or next to mitochondria, but not that it is primarily inside the mitochondria, and the immunoelectron microscopy data do not resolve this question. It is too early to suggest that this latest observation offers therapeutic potential, but one hopes it may with further, more definitive data.

View all comments by Vincent Marchesi


  Comment by:  Nathaniel Milton (Disclosure)
Submitted 19 April 2004  |  Permalink Posted 19 April 2004

It has been suggested previously that ERAB (aka ABAD) residues 99-108 contain the Aβ binding domain (Milton et al 2001) so it's nice to see that confirmed using different techniques.

Reference:
Milton, N.G.N., Mayor, N.P. & Rawlinson, J. (2001) Identification of amyloid-β binding sites using an antisense peptide approach. NeuroReport, 12, 2561-2566. Abstract

View all comments by Nathaniel Milton


  Comment by:  Robyn Mansfield
Submitted 17 April 2004  |  Permalink Posted 19 April 2004

This is the first article I've seen that provides a considerably complete mechanism for the toxicity of β amyloid in Alzheimer's disease. It ties together evidence of Aβ binding to ABAD, mitochondrial stress, and free radical involvement long implicated in Alzheimer's disease.

Are there any suggestions as to how the proposed mechanism may affect synaptic function prior to cell death? (Reference implicating synaptic dysfunction in Alzheimer's is included.)

Reference:
Selkoe, D. J. Alzheimer's disease is a synaptic failure. Science 298, 789-791. Abstract

View all comments by Robyn Mansfield


  Comment by:  Gjumrakch Aliev, Paula Moreira, Catarina Oliveira, George Perry, ARF Advisor (Disclosure), Maria Santos, Mark A. Smith (Disclosure)
Submitted 11 May 2004  |  Permalink Posted 11 May 2004

ABAD—The New/Old Good/Bad Guy in Alzheimer's Disease Lustbader and colleagues [1] present a complex potential mechanism for the role of amyloid β in Alzheimer's disease (AD) pathology. The authors created a crystal form of amyloid β-binding alcohol dehydrogenase (ABAD) and amyloid β that demonstrates that both molecules interact and accumulate inside mitochondria. They suggested that this interaction increases oxidative stress, mitochondrial dysfunction, and cell death occurring in AD.

AD, one of the most devastating age-related neurodegenerative diseases, is associated with oxidative stress, altered energy metabolism, and mitochondrial impairment [1-15]. Postmortem studies revealed a decline in the activities of pyruvate dehydrogenase and alpha-ketoglutarate dehydrogenase [16], key enzymes in energy metabolism that are localized in mitochondria. Furthermore, defects on cytochrome oxidase have also been described [17]. Furthermore, it was demonstrated that Aβ peptides and/or Ca2+ induce the opening of mitochondrial permeability transition pore (a process that results in a...  Read more

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